Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs6946450 chr7:46591803 A/G 4.89E-5 521 47.75 33.7 27.48 KM Plot
KIRC rs6953286 chr7:46580360 C/G 5.18E-5 518 47.58 33.8 28.7 KM Plot
KIRC rs6953732 chr7:46580472 G/A 5.18E-5 518 47.58 33.8 28.7 KM Plot
KIRC rs6958257 chr7:46580951 G/A 5.18E-5 518 47.58 33.8 28.7 KM Plot
KIRC rs6979731 chr7:46584911 G/A 7.46E-5 517 47.73 33.7 28.7 KM Plot
KIRC rs7025253 chr9:97388931 C/T 1.5E-5 524 4.63 41.87 39.17 KM Plot
KIRC rs7041552 chr9:97389199 A/G 1.43E-5 526 4.63 41.27 39.08 KM Plot
KIRC rs7104984 chr11:34965408 C/T 9.9E-8 520 42.2 26.17 6.87 KM Plot
KIRC rs71281885 chr3:48374374 G/GA 3.42E-5 506 39 42.88 23.1 KM Plot
KIRC rs71323394 chr3:48357208 C/T 3.27E-5 523 39.62 41.27 19.13 KM Plot
KIRC rs71323395 chr3:48374077 G/A 3.42E-5 506 39 42.88 23.1 KM Plot
KIRC rs71323397 chr3:48374874 A/G 3.42E-5 506 39 42.88 23.1 KM Plot
KIRC rs71395918 chr2:67670957 C/CAG 2.55E-7 523 39.47 39.53 2.03 KM Plot
KIRC rs71404187 chr2:2603889 C/CT 3.59E-5 525 39.23 45.13 8.35 KM Plot
KIRC rs71404188 chr2:2613883 GAATA/G 3.3E-5 527 39.23 45.13 8.35 KM Plot